Designing a Research Pipeline: Collect → Curate → Synthesize → Publish

A full-length, step-by-step guide to building a repeatable workflow that shepherds messy sources all the way to polished insights.

Skimboard Blog
Note:

Feel free to skim, but consider bookmarking—this is a soup-to-nuts reference you can return to whenever a project threatens to sprawl.


Why “Pipeline” Beats “To-Do List”

A classic checklist is linear: do task → check box → move on.
Complex research rarely behaves so politely. New sources appear mid-project, ideas mutate, and deliverables fork into articles, slide decks, and executive briefs.

A pipeline embraces that mess by creating four reusable, semi-independent stages:

  1. Collect – capture everything, friction-free
  2. Curate – filter, tag, and trust your metadata
  3. Synthesize – convert fragments into frameworks
  4. Publish – package findings for real humans

Because each stage has clear inputs & outputs, new material can enter at the top without derailing work further downstream.


1 · Collect — Capture Everything, Judge Nothing

Highlight: Goal: funnel every potentially useful piece of information into a single “inbox” with the least friction possible.

1.1 · Choose a Capture Toolset

Capture NeedFast & LightFull-Fidelity
Quick web snippetZotero Connector or Paperpile web-clipperSave complete PDF via browser “Save as PDF”
Mobile articleShare sheet → Drafts (iOS) / Obsidian QuickAddSend to yourself via email with “@inbox” label
Physical book pagePhone camera + ScanTailor auto-detect & cropDSLR + tripod + diffuse lights for archival-quality TIFF
Tip:

Assign Cmd/Ctrl + Shift + S to your clipper’s “Save to Inbox” function. One shortcut across all browsers keeps muscle memory tight.

1.2 · Name Files for the Future You


YYYY-Topic-Author-Keyphrase.pdf

# Example

2024-ClimatePolicy-Chen-CarbonTariffs.pdf
  • “scan_123.pdf” guarantees future pain.
  • Use ISO date at the front so alphabetical = chronological.
  • Limit to ~60 characters—some archival systems choke on long filenames.

1.3 · The 15-Minute Daily Sweep

Reserve a tiny slot—perhaps right before shutdown—to move everything that landed in your capture inbox today into the Curate stage. If that feels like drudgery, you’re on the right track: Collect is meant to be mindless; judgment lives in Curate.

Note:

Separating capture from evaluation cures “open tab guilt.” You’re allowed to save something first and decide later whether it deserves attention.


2 · Curate — Filter, Tag, and Trust Your Metadata

Highlight: Goal: reduce volume while enriching survivors with tags, abstracts, and context.

2.1 · Three-Bucket Triage

  1. Keep — directly relevant to your research question
  2. Archive — tangential but possibly useful later
  3. Discard — duplicates, off-topic, or irredeemably low quality

Case Study

Imagine you’re exploring renewable-energy finance. You import five new PDFs:

PDFImmediate DecisionWhy
2025-SolarBonds-Nguyen.pdfKeepDirectly models green bonds you’re analyzing
2023-HydroSubsidy-UN.pdfArchivePeripheral tech, could inform policy background
draft_v2_energy_mix.docxDiscardDuplicate of final version already stored

Within five minutes, the ingestion stack is empty and you’ve halved noise.

2.2 · Automated Metadata Tagging (Tiny Python Example)

# curate_tags.py
import pathlib, fitz  # PyMuPDF
ROOT = pathlib.Path("inbox")

for pdf in ROOT.glob("*.pdf"):
    doc = fitz.open(pdf)
    first_page = doc[0].get_text().lower()
    tags = []
    if "bond" in first_page:
        tags.append("finance")
    if "solar" in first_page:
        tags.append("solar")
    if tags:
        pdf.rename(pdf.with_name(f"{tags[0]}_{pdf.name}"))

Result: filenames get prefixed with the first detected tag, giving an at-a-glance clue inside any OS file browser.

Tip:

Keep a short, project-specific tag list (e.g., finance, policy, tech, dataset) and resist inventing new tags on the fly. Fewer tags = stronger recall.

2.3 · Smart Folders & Saved Searches

Set up dynamic folders that auto-collect items by tag or author. In Zotero, create a “Saved Search” where tag = policy AND year ≥ 2024. Now every new paper matching that rule appears without manual drag-and-drop.

Note:

Good metadata is like compound interest: one minute spent tagging today saves minutes every time you hunt for the source later.


3 · Synthesize — Turn Fragments into Frameworks

Highlight: Goal: connect dots, spot patterns, and generate original ideas or arguments.

3.1 · Progressive Summarization in Action

Below is a single paragraph from Nguyen (2025) followed by three summarization passes:

Full text “Green bonds issued in emerging economies grew by 34 percent year-over-year, with solar projects capturing the majority share. Investor appetite was buoyed by favorable regulatory tweaks, though currency-risk hedging remains a hurdle.”

  1. Layer 1 (Bold key sentences)

    Green bonds issued in emerging economies grew by 34 percent year-over-year, with solar projects capturing the majority share. Investor appetite was buoyed by favorable regulatory tweaks, though currency-risk hedging remains a hurdle.

  2. Layer 2 (Highlight must-remember phrases)

    34 % YoY growth, solar majority, FX hedging hurdle

  3. Layer 3 (One-line takeaway)

    Solar-led green-bond boom in emerging markets tempered by currency-risk costs.

Tip:

Re-skim Layer 3 statements weekly. Any vague line signals the need to revisit the source before memory fades.

3.2 · Visual Mapping Tools

ToolStrengthQuick-Start
Obsidian CanvasFreeform board inside markdown vaultDrag notes onto canvas, draw arrows for causal links
KinopioPlayful, web-first, effortless sharingHit N to create cards; connect with lines
yEd LiveAuto-arranged diagrams, CSV importPaste two-column edge list (from,to) → Layout → Hierarchical

Spend five minutes dropping key concepts and drawing relationships; surprises often emerge faster visually than in prose.

3.3 · Draft the Narrative Skeleton Early

Create a living outline the moment you finish your first batch of curated sources:

# Research question: How do solar-backed green bonds lower financing costs?

I.  Background & scope
II. Investor incentives
III. Case studies: India, Brazil, Vietnam
IV. Currency-risk mitigation strategies
V.  Policy implications
VI. Gap / future work

As you synthesize, drop bullet-point findings into the matching section. A skeletal structure beats a blank page when “real writing” begins.

Note:

Outlines are scaffolds, not cages. Re-order or merge sections anytime; the outline’s job is momentum, not perfection.


4 · Publish — Deliver Work That Lands

Highlight: Goal: transform polished insights into formats your audience can consume, share, and cite.

4.1 · Layered Deliverables

LayerAudienceLength
Executive abstractC-suite, policymakers150 words
Concise reportBusy analysts, grad seminar2 pages
Full reportDeep-dive readers, peer reviewers6 – 20 pages
Supplementary materialsData nerds, replication teamsCSVs, notebooks, appendices

By repackaging the same core research into multiple layers, you extend reach without rewriting from scratch.

4.2 · Peer-Review & Bias Checklist

Highlight: Use this before you hit “publish.”
  1. Claim sourcing — Every data point has a citation.
  2. Method transparency — Outline data collection & analysis steps.
  3. Alternative explanations — Note at least one plausible counter-argument.
  4. Accessibility pass — Alt-text for figures, plain-language summary.
  5. Link rot guard — Archive URLs via archive.today or perma.cc.
Tip:

Give reviewers a 48-hour window and specific focus areas (“data accuracy”, “flow”, “typos”) so feedback stays actionable.

4.3 · Template Outline (Markdown)

# Title
> One-sentence problem statement

## 1. Context
- Why this matters now
- Stakeholder landscape

## 2. Methods
- Data sources
- Analysis workflow

## 3. Key Findings
### 3.1 Finding A
### 3.2 Finding B

## 4. Implications
- Policy
- Practice

## 5. Limitations & Future Work

Duplicate this template for every major report; you’ll never face the blank-page jitters again.

Note:

Publishing is a feedback trigger, not a finish line. Citation alerts, email questions, or conference Q&A become new inputs for the Collect stage—closing the loop.


Quick-Start Checklist (Expanded)

ActionDetailTime
Create a universal inboxFolder / tag named “Inbox – Process Weekly” in Zotero, Obsidian, or Finder10 min
Automate metadata taggingAdapt the curate_tags.py snippet; run nightly with a cron job15 min setup
Schedule curation sprintFriday 4 pm – 4:15 pm: triage & tag15 min weekly
Commit to progressive summarizationBold → highlight → one-liner for each new Keep itemOngoing
Lay down a narrative skeletonDraft outline after first 5 solid sources20 min
Set a publication rhythmE.g., publish/update report every 4 weeks5 min decision
Tip:

2 hours Collect + Curate → 1 hour Synthesize → 2 hours drafting.
Swap order (1-2-2) when deadlines loom, but keep the ratios for flow.


Putting the Pieces Together

COLLECT → CURATE → SYNTHESIZE → PUBLISH
     ↑                             ↓
     └────────── feedback ─────────┘

Each segment is a valve, not a dam. By clarifying stage boundaries you avoid scope-creep paralysis and make incremental progress—even when new sources keep flooding in.

Highlight: Key takeaway:
Information overload is a design problem, not a personal failing. Install even a lightweight pipeline, and let structure—not heroic willpower—carry the load.


Ready to Try It?

Pick any pending project, big or small, and run just one cycle:

  1. Dump every source into your inbox.
  2. Spend 15 minutes triaging.
  3. Summarize two Keep items with progressive layers.
  4. Draft a 150-word abstract and share it.

You’ll feel the gears click—and that momentum is the best proof a pipeline works.

Note:

Have tweaks or success stories? Drop a comment on this post or tag me on whatever platform you prefer. Shared experiments make all our pipelines stronger.

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